Inve US ▾
ILILMN

Illumina (ILMN) Q2 FY26 earnings call: guidance and Q&A

Earnings call· Jun 2026 (Q2 FY26)· Health Care· Jul 30, 2026

Source: earnings call transcript

Executive summary

Illumina Q2 FY26 — Strong Clinical Demand Drives Raised Full-Year Guidance

Illumina delivered a strong Q2 FY26, driven by robust demand from clinical customers and continued high NovaSeq X placements, leading to raised full-year revenue and EPS guidance. The company is expanding its multiomics portfolio and seeing early traction with BioInsight, while navigating persistent caution in research markets and managing inflationary cost pressures. Management remains confident in achieving high single-digit revenue growth in 2027, supported by the expanding NovaSeq X installed base.

Highlights

5
  • Revenue grew 9.5% year-over-year to $1.16 billion, with Rest of World organic revenue up 8.1%.

  • NovaSeq X placements remained high with more than 95 units placed in the quarter.

  • Clinical sequencing consumables revenue grew 15% ex China, with U.S./Canada growing above 20%.

  • Non-GAAP EPS of $1.31 grew 10% year-over-year, exceeding guidance.

  • Full-year 2026 guidance for Rest of World organic revenue growth was raised to greater than 5% and diluted EPS to $5.30-$5.40.

Concerns

3
  • Research and academic markets remain cautious, with mid- to high single-digit declines expected for 2026.

  • Slower growth in Europe, Middle East, and Latin America for sequencing consumables due to ongoing near-term dynamics.

  • Higher freight and memory costs were absorbed in the quarter, impacting gross margin.

Guidance & targets

CategoryTargetConfidence
Full-year 2026 Rest of World organic revenue growth
greater than 5%
high materiality
High
Full-year 2026 reported revenue
$4.60 billion to $4.64 billion
high materiality
High
Full-year 2026 Rest of World organic sequencing consumables growth
mid-single-digit growth
medium materiality
High
Full-year 2026 clinical sequencing consumables growth
mid-teens growth
high materiality
High
Full-year 2026 research and applied consumables growth
mid- to high single-digit declines
medium materiality
Medium
Full-year 2026 sequencing instruments Rest of World organic growth
low single digits
medium materiality
High
Full-year 2026 non-GAAP operating margin
23.4% to 23.6%
high materiality
High
Full-year 2026 diluted EPS
$5.30 to $5.40
high materiality
High
Q3 2026 Rest of World organic revenue growth
approximately 4.5%
medium materiality
High
Q3 2026 reported revenue
$1.14 billion to $1.16 billion
medium materiality
High
Q3 2026 non-GAAP EPS
$1.33 to $1.38
medium materiality
High
Q3 2026 non-GAAP operating margin
approximately 24%
medium materiality
High
New products contribution to growth
1 to 2 points
medium materiality
Medium
Revenue growth
high single-digit revenue growth
high materiality
High
Clinical volume conversion to NovaSeq X
80% to 85%
medium materiality
High

ILMN operating KPIs by quarter

ILMN operating KPIs stated on its earnings calls, by fiscal quarter
KPI Dec 2024 Q4 FY24 Mar 2025 Q1 FY25 Sep 2025 Q3 FY25This call Jun 2026 Q2 FY26Change vs prior quarter
NovaSeq X placements
91 We placed 91 instruments during the quarter, bringing the installed base to 630. Source: earnings call transcript
60+ Our NovaSeq X instruments continue to perform well, exceeding our expectations with another quarter of over 60 placements in Q1, following more than 90 placements in Q4. Source: earnings call transcript
55+ In Q3, we had another strong quarter for the NovaSeq X with more than 55 instruments placed in line with our goal of 50 to 60 placements per quarter. Source: earnings call transcript
95+ Rest of World organic revenue grew 8.1%, above the high end of our guidance and demand for NovaSeq X remained high more than 3 years after launch with more than 95 placements in the quarter. Source: earnings call transcript
—

Operating figures the company stated on at least two of the calls shown, checked against each call's transcript. Click a figure to read the sentence. A dash means it was not stated that quarter.

Product announcements

ProductTypeDetails
Whole genome MRD research workflowlaunch
StrataMap Spatiallaunch

Deals & partnerships

SomaLogic Acquisition of proteomics company

Following the close of the SomaLogic acquisition, newly branded SomaScan and SomaSeq offerings are generating strong interest and helping customers connect proteomics and genomic insights.

Biopharma partners Collaboration on Billion Cell Atlas program for AI-enabled drug discovery

BioInsight brings together sequencing, perturbation tools, compute power and AI to build high-quality multiomics data sets and interpretation tools. The Billion Cell Atlas is a genome-wide perturbation data set, with over 300 million cells delivered to date.

Risks & headwinds

Research and academic market funding uncertainty FY26

Mid- to high single-digit declines expected for 2026 in research and applied consumables.

Mitigation:Monitoring trends; some signs of improvement late in Q2, but too early to call a recovery.

Slower growth in Europe, Middle East, and Latin America Q2 FY26

Clinical sequencing consumables growth slower than U.S./Canada.

Mitigation:Acknowledged as due to ongoing near-term dynamics in the region (e.g., Middle East situation).

Higher freight and memory costs Q2 FY26 and ongoing

Absorbed in Q2, impacting gross margin.

Mitigation:Operational excellence, sharing some cost increase with customers, securing supply for critical components for next few quarters.

Tougher comparisons for instrument growth Second half of FY26

Moderation in year-over-year growth rates for sequencing instruments.

Mitigation:NovaSeq X demand remains robust, and unit placements are expected to remain at elevated levels.

What to watch in Q3 FY26

Research market recovery

next quarter
Current Customers remain cautious; mid- to high single-digit declines expected for 2026.
Target Signs of sustained improvement in funding and order patterns.

Why it matters

A recovery in research markets could provide additional revenue tailwinds beyond clinical strength.

In research and academic markets, results improved from Q1, but customers remain cautious as they navigate funding uncertainty. We saw some signs of improvements late in the quarter, but it's too early to call a recovery.

Find out whether ILMN delivers this. Inve re-checks your case every morning.

Q&A highlights

Given strong clinical growth and NovaSeq X placements, why shouldn't 2027 revenue growth be higher than the previously outlined high single-digit target?

Management is very pleased with Q2 performance and believes clinical market momentum will continue for years, driven by elevated NovaSeq X placements. While committed to high single-digit growth for 2027, they will focus on building strong value propositions and see where it takes them, acknowledging that the 'clinical cliff' is more of a 'wave' they are surfing.

“I'm still very committed to delivering on the high single-digit growth, but we will continue to focus on building a very, very strong value proposition to our customers, and then we see where it takes us.”

asked by Puneet Souda · answered by Jacob Thaysen

2 min read 5 chapters

Detailed narrative

Strong Q2 Performance and Raised Outlook

Illumina reported a strong Q2 FY26, with revenue growing 9.5% year-over-year to $1.16 billion, or 6.5% on an organic basis. Rest of World organic revenue growth was 8.1%, exceeding guidance. This performance, coupled with disciplined expense management, led to non-GAAP EPS of $1.31, a 10% year-over-year increase, also above expectations.

Consequently, the company raised its full-year 2026 guidance for Rest of World organic revenue growth to greater than 5% and diluted EPS to $5.30-$5.40, reflecting increased confidence for the second half of the year.

Clinical Market Momentum and NovaSeq X Adoption

Clinical markets, representing approximately 65% of sequencing consumables revenue, continued to be the primary growth driver. Rest of World clinical growth was broad-based at 15% ex China, with U.S./Canada showing particular strength, growing above 20%. The company placed over 95 NovaSeq X instruments in Q2, with demand remaining high, especially from large clinical customers expanding capacity for new trials.

This expanding NovaSeq X installed base is expected to drive consumable growth beyond 2026 and support the path towards high single-digit revenue growth in 2027.

Innovation and Multiomics Expansion

Illumina is expanding its multiomics offerings to provide customers with more ways to analyze biology. Key innovations include the launch of the whole genome MRD research workflow, designed to shorten assay development timelines, and the StrataMap Spatial, a sequencing-based spatial workflow.

The company is also seeing sustained proteomics momentum following the SomaLogic acquisition and is expanding its BioInsight data and insights offerings, including the Billion Cell Atlas, which has delivered over 300 million cells and secured 6 pharma partners, generating early revenue.

Cautious Research Market and Operational Efficiency

While clinical markets thrive, research and academic markets remain cautious due to funding uncertainty, with sequencing consumables in this segment declining 7% Rest of World. Despite some signs of improvement late in the quarter, a full recovery is not yet anticipated for 2026.

Operationally, Illumina absorbed higher freight and memory costs in Q2, but non-GAAP gross margin still came in slightly better than expected at 68.2%, demonstrating the team's ability to manage headwinds through cost actions and improved efficiency.

Strategic Capital Allocation and Leadership Additions

The company generated $162 million in free cash flow and repurchased 0.9 million shares for $122 million in Q2, with $1.8 billion remaining under authorization. Illumina ended the quarter with $1.17 billion in cash and a leverage ratio of 1.6x gross debt to LTM EBITDA.

The management team was strengthened with the addition of Michael Sullivan and Julie Coletti, and the Board welcomed David King and Dan Skovronsky, bringing deep healthcare and R&D experience to support clinical and innovation priorities.

Summary of the company's earnings call; see how call summaries are prepared. Not investment advice.