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10x Genomics (TXG) Q1 FY26 earnings call: guidance and Q&A

Earnings call· Mar 2026 (Q1 FY26)· Health Care· May 7, 2026

Source: earnings call transcript

Executive summary

10x Genomics Q1 FY26 — Atera Launch Exceeds Expectations, Driving Spatial Momentum

10x Genomics reported a solid start to the year, marked by strong sales momentum and the highly anticipated launch of its Atera instrument platform, which has garnered extraordinary customer response. The company is navigating a challenging capital equipment environment and expects near-term revenue cadence to reflect customer anticipation for Atera, while maintaining its full-year outlook. Management emphasized the long-term potential of AI-driven research and translational applications as key growth drivers for its single cell and spatial technologies.

Highlights

5
  • Q1 FY26 revenue of $150.8 million, up 9% year-over-year excluding prior-year settlement revenue.

  • Single Cell consumables revenue up 6% with double-digit growth in reaction volumes, driven by Flex Apex.

  • Spatial consumables revenue up 31%, driven by Xenium momentum.

  • Gross margin improved to 70% for Q1 FY26, up from 68% in prior year period.

  • Cash, cash equivalents, and marketable securities increased by $113 million year-over-year to $540 million.

Concerns

3
  • Total instrument revenue declined 24% year-over-year, with Chromium down 12% and Spatial down 32%.

  • Anticipated sequential revenue step-down in Q2 and Q3 FY26 due to customers delaying Spatial purchases in anticipation of Atera.

  • Initial production capacity for Atera will be limited in 2026, with approximately 40 units expected to ship in Q3/Q4.

Guidance & targets

CategoryTargetConfidence
Full-year 2026 Revenue
$600 million to $625 million
high materiality
High
Full-year 2026 Single Cell Consumables Reactions Growth
double-digit growth
medium materiality
High
Full-year 2026 Spatial Consumables Revenue Growth
double-digit growth
medium materiality
High
Q2 FY26 Revenue
step down sequentially from Q1
medium materiality
High
Q3 FY26 Revenue
broadly similar to the second quarter
medium materiality
High
Atera Shipments Contribution to Revenue
begin contributing meaningfully to revenue
high materiality
High
Full-year 2026 Operating Expenses
roughly flat
medium materiality
High
Atera Units to be Placed
approximately 40 units
high materiality
High

Segment performance

SegmentRevenueYoYQoQMargin
Total Consumables
Growth in both Single Cell and Spatial consumables.
—13%——
Single Cell Consumables
Supported by double-digit growth in reaction volumes, with Flex Apex being the most popular assay.
Reaction volumes growth: double-digitMost popular assay by volume: Flex Apex
—6%——
Spatial Consumables
Driven by Xenium consumables momentum.
—31%——
Total Instrument
Decline due to Chromium and Spatial instrument revenue decreases, and anticipation of Atera launch.
—-24%——
Chromium Instrument
Decline in instrument revenue.
—-12%——
Spatial Instrument
Decline in instrument revenue, primarily due to anticipation of Atera launch.
—-32%——
Americas
Growth excluding impact of license and royalty revenue in Q1 2025.
—9%——
EMEA
Strong growth.
—16%——
APAC
Solid growth.
—5%——

Product announcements

ProductTypeDetails
Ateralaunch

Deals & partnerships

Chan Zuckerberg Initiative Collaboration on the Billion Cells Project

Partnership reflecting and reinforcing trends in AI-driven research and large-scale data generation.

Arc Institute Collaboration around the Virtual Cell Challenge

Partnership reflecting and reinforcing trends in AI-driven research and large-scale data generation.

Xaira Therapeutics Collaboration to build the largest perturbation dataset ever reported

Partnership reflecting and reinforcing trends in AI-driven research and large-scale data generation.

Bioptimus Collaboration on STELA, a global initiative to profile up to 100,000 patient tissue specimens

Bioptimus is an AI-focused biotech company. The initiative aims to build a data backbone for a world model of biology, starting on Xenium and planning to expand to Atera over time.

Chan Zuckerberg Biohub New $500 million Virtual Biology Initiative $500 million

The initiative aims to build AI models that can accurately simulate cells and tissues in silico, galvanizing the scientific ecosystem for advancing science and medicine.

Risks & headwinds

Challenging capital equipment environment Q1 FY26, ongoing

Spatial instrument revenue down 32% YoY; Chromium instrument revenue down 12% YoY

Mitigation:Atera's compelling capabilities are driving customers to find CapEx; strategic timing of Atera launch to align with budget cycles.

Customer delay of Spatial product purchases Q2 and Q3 FY26

Q2 and Q3 FY26 revenue expected to step down sequentially from Q1

Mitigation:Anticipated and incorporated into full-year guidance; existing products continue to be used for ongoing studies and established workflows.

Limited initial production capacity for Atera Q4 FY26

Approximately 40 units expected to ship in Q3-Q4 FY26

Mitigation:Ramping up production for 2027; deliberate and rigorous approach to building and testing the sophisticated instrument.

Pricing headwind from Flex Apex Q1 FY26, near-term

Similar to Q4 FY25

Mitigation:Early in launch, happy with progress and large scaling of volumes; expect widespread adoption and pricing stabilization in 2027.

What to watch in Q2 FY26

Q2 FY26 Revenue

next quarter
Current $150.8 million (Q1 FY26)
Target low single-digit decline sequentially from Q1

Why it matters

Verifies management's expectation of a sequential step-down in revenue due to Atera anticipation, impacting near-term financial performance.

We expect second quarter revenue to step down sequentially from Q1, reflecting lower Spatial sales as customers wait for Atera to start shipping.

Find out whether TXG delivers this. Inve re-checks your case every morning.

Q&A highlights

What is the customer reception and funnel for Atera, and how will its launch impact the existing Spatial portfolio and Q2/Q3 sales?

Customer response to Atera has been extraordinary, exceeding expectations, with strong pre-orders from across the market. The company anticipated changes to ordering dynamics for existing Spatial products, which are incorporated into the full-year guide. Existing products continue to be used robustly for ongoing studies.

“And overall, it's all going really very much in accordance with our expectations. Again, we have lots of experience with past product launches and new kind of versions of things and new capabilities. And so we've been prepared. And of course, there's going to be effect on customer order patterns.”

asked by Patrick Donnelly · answered by Serge Saxonov

2 min read 6 chapters

Detailed narrative

Atera Launch and Capabilities

The company launched Atera, its new instrument platform, which is described as the most significant product introduction in its history. Atera enables spatial whole transcriptome analysis with single cell sensitivity at scale, processing up to 800 whole transcriptome 1 cm² samples per year or over 3,000 with targeted panels. It builds on the Xenium workflow, uses standard glass slides, and features powerful computational tools for efficient data processing, addressing historical trade-offs in spatial biology.

Extraordinary Customer Response to Atera

Customer reception to Atera has exceeded high expectations, with researchers calling it a 'technology leap' and the 'holy grail.' This enthusiasm is translating into strong pre-orders, with customers immediately focusing on integrating Atera into multi-year research programs and large cohort studies. The platform is seen as a 'must-have' despite a challenging capital equipment environment, with customers finding CapEx for its acquisition.

AI as a Structural Tailwind

AI is identified as a significant and structural tailwind for the business, driving demand for large amounts of high-quality biological data. Products like Flex Apex and Atera are designed to meet this need, with intense interest from customers building AI models. Partnerships with Chan Zuckerberg Initiative, Arc Institute, Xaira Therapeutics, and Bioptimus (for the STELA initiative) underscore the growing importance of AI-driven research and large-scale data generation.

Translational Applications and Clinical Evidence

There is growing interest in translational applications across academia and biopharma, with a focus on identifying human-relevant drug targets and biomarkers. Flex Apex and Xenium have proven valuable in these settings, and Atera is expected to extend this momentum by enabling larger studies with more information content. The company is pursuing internal efforts to generate clinical evidence for tissue-based spatial profiling in oncology and blood-based single cell monitoring in autoimmune disease.

Spatial Portfolio Strategy and Cannibalization

The company anticipates some customers may delay purchases of current Spatial products (Xenium, Visium) in anticipation of Atera, a dynamic factored into the full-year guidance. While Atera is expected to reinforce the trend towards imaging-based readouts and eventually attract more applications, existing platforms like Visium will continue to be used robustly for ongoing projects and established workflows due to their proven capabilities and customer loyalty.

Financial Performance and Operational Discipline

The company has significantly improved its operating profile over the past year, growing its cash balance by over $100 million despite a challenging macro environment. Gross margin improved due to lower warranty costs and inventory write-downs. Operating expenses decreased significantly year-over-year, reflecting disciplined cost management, with expectations for OpEx to be roughly flat year-on-year for FY26.

Summary of the company's earnings call; see how call summaries are prepared. Not investment advice.